Summary of assembly and annotation
 
 Scientific name   JCM no.
 Mrakia frigida   7857
Genome assembly:
ALLPATHS-LG (ver. 52488)
Genome assembly ver. 001
Estimated genome size   37,297,732
Sequence coverage   145
# of contigs   269
Total length (contigs)   28,409,804
N50 (contigs)   304,905
# of scaffolds   149
Total scaffold length (with gaps)   28,616,317
% gaps   0.7
N50 (scaffold)   714,753
GC%   54.0
Gene prediction:
  MAKER annotation pipeline (release 2.31.8)
    Gene predictors used: Augustus (3.0.3), SNAP (2013-02-16), GeneMark-ES (Suite 4.21)
    Reference used: Cryptococcus neoformans
    tRNAscan-SE (version 1.23)
  Infernal cmscan (version 1.1.1)
    Database used: Rfam (Release 12.0)
Functional annotaion:
  Sma3S: 2013-09-01
    Database used: Uniprot-TrEMBL (release 2015_11), Uniprot-sprot (release 2015_11)
Gene prediction & funcational annotation ver. 001
# of predicted gene models   9,504
# of predicted transcript models   9,504
Average transcript length (bp)   2,375
Average coding length (bp)   1,574
Average protein length (aa)   524
Average number of exons per gene model   8.6
Average exon size (bp)   183
Average intron size (bp)   105
# of non-coding RNA   6,047
# of functionally annotated genes trembl   5,710
# of functionally annotated genes sprot   2,029
CEGMA complete (%)   93.55
CEGMA partial (%)   95.56