Summary of assembly and annotation
 
 Scientific name   JCM no.
 Ambrosiozyma monospora   7599
Genome assembly:
ALLPATHS-LG (ver. 52155)
Genome assembly ver. 001
Estimated genome size   29,591,737
Sequence coverage   82
# of contigs   306
Total length (contigs)   24,601,916
N50 (contigs)   206,887
# of scaffolds   118
Total scaffold length (with gaps)   24,978,438
% gaps   1.5
N50 (scaffold)   679,229
GC%   37.2
Gene prediction:
  MAKER annotation pipeline (release 2.31.8)
    Gene predictors used: Augustus (3.0.3), SNAP (2013-02-16), GeneMark-ES (Suite 4.21)
    Reference used: Hansenula polymorpha
    tRNAscan-SE (version 1.23)
  Infernal cmscan (version 1.1.1)
    Database used: Rfam (Release 12.0)
Functional annotaion:
  Sma3S: 2013-09-01
    Database used: Uniprot-TrEMBL (release 2015_11), Uniprot-sprot (release 2015_11)
Gene prediction & funcational annotation ver. 001
# of predicted gene models   8,147
# of predicted transcript models   8,147
Average transcript length (bp)   2,002
Average coding length (bp)   1,561
Average protein length (aa)   520
Average number of exons per gene model   1.5
Average exon size (bp)   1,031
Average intron size (bp)   844
# of non-coding RNA   1,707
# of functionally annotated genes trembl   4,985
# of functionally annotated genes sprot   2,902
CEGMA complete (%)   94.35
CEGMA partial (%)   95.16