Summary of assembly and annotation
 
 Scientific name   JCM no.
 Thielaviopsis ethacetica   6961
Genome assembly:
ALLPATHS-LG (ver. 52155)
Genome assembly ver. 001
Estimated genome size   35,662,482
Sequence coverage   154
# of contigs   543
Total length (contigs)   29,325,786
N50 (contigs)   89,197
# of scaffolds   76
Total scaffold length (with gaps)   29,468,565
% gaps   0.5
N50 (scaffold)   620,065
GC%   50.8
Gene prediction:
  MAKER annotation pipeline (release 2.31.8)
    Gene predictors used: Augustus (3.0.3), SNAP (2013-02-16), GeneMark-ES (Suite 4.21)
    Reference used: Ophiostoma piceae
    tRNAscan-SE (version 1.23)
  Infernal cmscan (version 1.1.1)
    Database used: Rfam (Release 12.0)
Functional annotaion:
  Sma3S: 2013-09-01
    Database used: Uniprot-TrEMBL (release 2015_11), Uniprot-sprot (release 2015_11)
Gene prediction & funcational annotation ver. 001
# of predicted gene models   7,340
# of predicted transcript models   7,340
Average transcript length (bp)   1,784
Average coding length (bp)   1,583
Average protein length (aa)   527
Average number of exons per gene model   2.6
Average exon size (bp)   604
Average intron size (bp)   122
# of non-coding RNA   2,368
# of functionally annotated genes trembl   6,349
# of functionally annotated genes sprot   2,392
CEGMA complete (%)   95.16
CEGMA partial (%)   97.58