Summary of assembly and annotation
 
 Scientific name   JCM no.
 Thielaviopsis euricoi   6020
Genome assembly:
ALLPATHS-LG (ver. 52488)
Genome assembly ver. 001
Estimated genome size   39,963,183
Sequence coverage   207
# of contigs   291
Total length (contigs)   29,592,545
N50 (contigs)   193,353
# of scaffolds   30
Total scaffold length (with gaps)   29,634,442
% gaps   0.1
N50 (scaffold)   1,902,109
GC%   49.0
Gene prediction:
  MAKER annotation pipeline (release 2.31.8)
    Gene predictors used: Augustus (3.0.3), SNAP (2013-02-16), GeneMark-ES (Suite 4.21)
    Reference used: Chalara longipes
    tRNAscan-SE (version 1.23)
  Infernal cmscan (version 1.1.1)
    Database used: Rfam (Release 12.0)
Functional annotaion:
  Sma3S: 2013-09-01
    Database used: Uniprot-TrEMBL (release 2015_11), Uniprot-sprot (release 2015_11)
Gene prediction & funcational annotation ver. 001
# of predicted gene models   7,303
# of predicted transcript models   7,303
Average transcript length (bp)   1,808
Average coding length (bp)   1,595
Average protein length (aa)   531
Average number of exons per gene model   2.6
Average exon size (bp)   609
Average intron size (bp)   129
# of non-coding RNA   1,271
# of functionally annotated genes trembl   6,328
# of functionally annotated genes sprot   2,379
CEGMA complete (%)   95.16
CEGMA partial (%)   97.98

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