Summary of assembly and annotation
 
 Scientific name   JCM no.
 Golubevia pallescens   5230
Genome assembly:
ALLPATHS-LG (ver. 52155)
Genome assembly ver. 001
Estimated genome size   29,169,862
Sequence coverage   156
# of contigs   173
Total length (contigs)   27,611,045
N50 (contigs)   380,761
# of scaffolds   63
Total scaffold length (with gaps)   27,756,302
% gaps   0.5
N50 (scaffold)   1,182,044
GC%   43.2
Gene prediction:
  MAKER annotation pipeline (release 2.31.8)
    Gene predictors used: Augustus (3.0.3), SNAP (2013-02-16), GeneMark-ES (Suite 4.21)
    Reference used: Malassezia globosa
    tRNAscan-SE (version 1.23)
  Infernal cmscan (version 1.1.1)
    Database used: Rfam (Release 12.0)
Functional annotaion:
  Sma3S: 2013-09-01
    Database used: Uniprot-TrEMBL (release 2015_11), Uniprot-sprot (release 2015_11)
Gene prediction & funcational annotation ver. 001
# of predicted gene models   9,297
# of predicted transcript models   9,297
Average transcript length (bp)   2,178
Average coding length (bp)   1,670
Average protein length (aa)   556
Average number of exons per gene model   4.2
Average exon size (bp)   393
Average intron size (bp)   155
# of non-coding RNA   1,034
# of functionally annotated genes trembl   5,200
# of functionally annotated genes sprot   1,886
CEGMA complete (%)   93.95
CEGMA partial (%)   94.35

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