Summary of assembly and annotation
 
 Scientific name   JCM no.
 Yarrowia sp.   30696
Genome assembly:
ALLPATHS-LG (ver. 52488)
Genome assembly ver. 001
Estimated genome size   29,072,736
Sequence coverage   146
# of contigs   209
Total length (contigs)   21,440,031
N50 (contigs)   266,141
# of scaffolds   39
Total scaffold length (with gaps)   21,750,525
% gaps   1.4
N50 (scaffold)   2,201,853
GC%   47.9
Gene prediction:
  MAKER annotation pipeline (release 2.31.8)
    Gene predictors used: Augustus (3.0.3), SNAP (2013-02-16), GeneMark-ES (Suite 4.21)
    Reference used: Yarrowia lipolytica
    tRNAscan-SE (version 1.23)
  Infernal cmscan (version 1.1.1)
    Database used: Rfam (Release 12.0)
Functional annotaion:
  Sma3S: 2013-09-01
    Database used: Uniprot-TrEMBL (release 2015_11), Uniprot-sprot (release 2015_11)
Gene prediction & funcational annotation ver. 001
# of predicted gene models   6,583
# of predicted transcript models   6,583
Average transcript length (bp)   1,574
Average coding length (bp)   1,430
Average protein length (aa)   476
Average number of exons per gene model   1.3
Average exon size (bp)   1,105
Average intron size (bp)   479
# of non-coding RNA   950
# of functionally annotated genes trembl   5,991
# of functionally annotated genes sprot   2,742
CEGMA complete (%)   93.95
CEGMA partial (%)   94.76