Summary of assembly and annotation
 
 Scientific name   JCM no.
 Yarrowia sp.   30695
Genome assembly:
ALLPATHS-LG (ver. 52488)
Genome assembly ver. 001
Estimated genome size   27,926,747
Sequence coverage   145
# of contigs   190
Total length (contigs)   21,670,510
N50 (contigs)   304,279
# of scaffolds   41
Total scaffold length (with gaps)   21,900,276
% gaps   1.0
N50 (scaffold)   2,943,663
GC%   47.8
Gene prediction:
  MAKER annotation pipeline (release 2.31.8)
    Gene predictors used: Augustus (3.0.3), SNAP (2013-02-16), GeneMark-ES (Suite 4.21)
    Reference used: Yarrowia lipolytica
    tRNAscan-SE (version 1.23)
  Infernal cmscan (version 1.1.1)
    Database used: Rfam (Release 12.0)
Functional annotaion:
  Sma3S: 2013-09-01
    Database used: Uniprot-TrEMBL (release 2015_11), Uniprot-sprot (release 2015_11)
Gene prediction & funcational annotation ver. 001
# of predicted gene models   6,592
# of predicted transcript models   6,592
Average transcript length (bp)   1,596
Average coding length (bp)   1,426
Average protein length (aa)   475
Average number of exons per gene model   1.3
Average exon size (bp)   1,117
Average intron size (bp)   436
# of non-coding RNA   899
# of functionally annotated genes trembl   6,009
# of functionally annotated genes sprot   2,752
CEGMA complete (%)   94.76
CEGMA partial (%)   94.76