Summary of assembly and annotation
 
 Scientific name   JCM no.
 Yarrowia sp.   30694
Genome assembly:
ALLPATHS-LG (ver. 52488)
Genome assembly ver. 001
Estimated genome size   26,640,586
Sequence coverage   150
# of contigs   247
Total length (contigs)   21,531,663
N50 (contigs)   208,845
# of scaffolds   19
Total scaffold length (with gaps)   21,758,297
% gaps   1.0
N50 (scaffold)   2,956,712
GC%   46.0
Gene prediction:
  MAKER annotation pipeline (release 2.31.8)
    Gene predictors used: Augustus (3.0.3), SNAP (2013-02-16), GeneMark-ES (Suite 4.21)
    Reference used: Yarrowia lipolytica
    tRNAscan-SE (version 1.23)
  Infernal cmscan (version 1.1.1)
    Database used: Rfam (Release 12.0)
Functional annotaion:
  Sma3S: 2013-09-01
    Database used: Uniprot-TrEMBL (release 2015_11), Uniprot-sprot (release 2015_11)
Gene prediction & funcational annotation ver. 001
# of predicted gene models   6,942
# of predicted transcript models   6,942
Average transcript length (bp)   1,571
Average coding length (bp)   1,406
Average protein length (aa)   468
Average number of exons per gene model   1.3
Average exon size (bp)   1,118
Average intron size (bp)   468
# of non-coding RNA   856
# of functionally annotated genes trembl   6,036
# of functionally annotated genes sprot   2,733
CEGMA complete (%)   94.76
CEGMA partial (%)   95.56