Summary of assembly and annotation
 
 Scientific name   JCM no.
 Pilasporangium apinafurcum   30514
Genome assembly:
ALLPATHS-LG (ver. 52488)
Genome assembly ver. 001
Estimated genome size   49,478,566
Sequence coverage   246
# of contigs   855
Total length (contigs)   36,004,891
N50 (contigs)   121,426
# of scaffolds   280
Total scaffold length (with gaps)   37,444,745
% gaps   3.8
N50 (scaffold)   449,626
GC%   43.9
Gene prediction:
  MAKER annotation pipeline (release 2.31.8)
    Gene predictors used: Augustus (3.0.3), SNAP (2013-02-16), GeneMark-ES (Suite 4.21)
    Reference used: Pythium ultimum var. sporangiiferum
    tRNAscan-SE (version 1.23)
  Infernal cmscan (version 1.1.1)
    Database used: Rfam (Release 12.0)
Functional annotaion:
  Sma3S: 2013-09-01
    Database used: Uniprot-TrEMBL (release 2015_11), Uniprot-sprot (release 2015_11)
Gene prediction & funcational annotation ver. 001
# of predicted gene models   14,069
# of predicted transcript models   14,069
Average transcript length (bp)   1,860
Average coding length (bp)   1,567
Average protein length (aa)   522
Average number of exons per gene model   2.9
Average exon size (bp)   541
Average intron size (bp)   152
# of non-coding RNA   1,579
# of functionally annotated genes trembl   2,697
# of functionally annotated genes sprot   1,373
CEGMA complete (%)   93.95
CEGMA partial (%)   96.37