Summary of assembly and annotation
 
 Scientific name   JCM no.
 Pilasporangium apinafurcum   30513
Genome assembly:
ALLPATHS-LG (ver. 52488)
Genome assembly ver. 001
Estimated genome size   53,054,198
Sequence coverage   184
# of contigs   899
Total length (contigs)   35,860,088
N50 (contigs)   112,341
# of scaffolds   310
Total scaffold length (with gaps)   37,582,498
% gaps   4.6
N50 (scaffold)   400,608
GC%   43.5
Gene prediction:
  MAKER annotation pipeline (release 2.31.8)
    Gene predictors used: Augustus (3.0.3), SNAP (2013-02-16), GeneMark-ES (Suite 4.21)
    Reference used: Pythium ultimum var. sporangiiferum
    tRNAscan-SE (version 1.23)
  Infernal cmscan (version 1.1.1)
    Database used: Rfam (Release 12.0)
Functional annotaion:
  Sma3S: 2013-09-01
    Database used: Uniprot-TrEMBL (release 2015_11), Uniprot-sprot (release 2015_11)
Gene prediction & funcational annotation ver. 001
# of predicted gene models   13,996
# of predicted transcript models   13,996
Average transcript length (bp)   1,857
Average coding length (bp)   1,566
Average protein length (aa)   522
Average number of exons per gene model   2.9
Average exon size (bp)   541
Average intron size (bp)   151
# of non-coding RNA   1,780
# of functionally annotated genes trembl   2,665
# of functionally annotated genes sprot   1,369
CEGMA complete (%)   93.55
CEGMA partial (%)   95.56