Summary of assembly and annotation
 
 Scientific name   JCM no.
 Dioszegia crocea   2961
Genome assembly:
ALLPATHS-LG (ver. 52488)
Genome assembly ver. 001
Estimated genome size   24,588,447
Sequence coverage   176
# of contigs   86
Total length (contigs)   20,474,748
N50 (contigs)   706,869
# of scaffolds   26
Total scaffold length (with gaps)   20,595,339
% gaps   0.6
N50 (scaffold)   1,954,963
GC%   53.2
Gene prediction:
  MAKER annotation pipeline (release 2.31.8)
    Gene predictors used: Augustus (3.0.3), SNAP (2013-02-16), GeneMark-ES (Suite 4.21)
    Reference used: Cryptococcus neoformans
    tRNAscan-SE (version 1.23)
  Infernal cmscan (version 1.1.1)
    Database used: Rfam (Release 12.0)
Functional annotaion:
  Sma3S: 2013-09-01
    Database used: Uniprot-TrEMBL (release 2015_11), Uniprot-sprot (release 2015_11)
Gene prediction & funcational annotation ver. 001
# of predicted gene models   8,753
# of predicted transcript models   8,753
Average transcript length (bp)   1,801
Average coding length (bp)   1,502
Average protein length (aa)   500
Average number of exons per gene model   5.8
Average exon size (bp)   259
Average intron size (bp)   61
# of non-coding RNA   172
# of functionally annotated genes trembl   5,627
# of functionally annotated genes sprot   1,844
CEGMA complete (%)   93.95
CEGMA partial (%)   95.56