Summary of assembly and annotation
 
 Scientific name   JCM no.
 Dioszegia aurantiaca   2956
Genome assembly:
ALLPATHS-LG (ver. 52488)
Genome assembly ver. 001
Estimated genome size   22,959,853
Sequence coverage   112
# of contigs   139
Total length (contigs)   19,185,232
N50 (contigs)   350,057
# of scaffolds   52
Total scaffold length (with gaps)   19,344,119
% gaps   0.8
N50 (scaffold)   1,282,637
GC%   53.6
Gene prediction:
  MAKER annotation pipeline (release 2.31.8)
    Gene predictors used: Augustus (3.0.3), SNAP (2013-02-16), GeneMark-ES (Suite 4.21)
    Reference used: Cryptococcus neoformans
    tRNAscan-SE (version 1.23)
  Infernal cmscan (version 1.1.1)
    Database used: Rfam (Release 12.0)
Functional annotaion:
  Sma3S: 2013-09-01
    Database used: Uniprot-TrEMBL (release 2015_11), Uniprot-sprot (release 2015_11)
Gene prediction & funcational annotation ver. 001
# of predicted gene models   8,106
# of predicted transcript models   8,106
Average transcript length (bp)   1,817
Average coding length (bp)   1,523
Average protein length (aa)   507
Average number of exons per gene model   5.9
Average exon size (bp)   258
Average intron size (bp)   59
# of non-coding RNA   249
# of functionally annotated genes trembl   5,444
# of functionally annotated genes sprot   1,793
CEGMA complete (%)   93.15
CEGMA partial (%)   94.76