Summary of assembly and annotation
 
 Scientific name   JCM no.
 Apiotrichum laibachii   2947
Genome assembly:
ALLPATHS-LG (ver. 52488)
Genome assembly ver. 001
Estimated genome size   40,389,392
Sequence coverage   107
# of contigs   185
Total length (contigs)   30,455,653
N50 (contigs)   331,945
# of scaffolds   26
Total scaffold length (with gaps)   30,616,633
% gaps   0.5
N50 (scaffold)   2,819,049
GC%   59.6
Gene prediction:
  MAKER annotation pipeline (release 2.31.8)
    Gene predictors used: Augustus (3.0.3), SNAP (2013-02-16), GeneMark-ES (Suite 4.21)
    Reference used: Cryptococcus neoformans
    tRNAscan-SE (version 1.23)
  Infernal cmscan (version 1.1.1)
    Database used: Rfam (Release 12.0)
Functional annotaion:
  Sma3S: 2013-09-01
    Database used: Uniprot-TrEMBL (release 2015_11), Uniprot-sprot (release 2015_11)
Gene prediction & funcational annotation ver. 001
# of predicted gene models   10,074
# of predicted transcript models   10,074
Average transcript length (bp)   1,695
Average coding length (bp)   1,436
Average protein length (aa)   478
Average number of exons per gene model   4.1
Average exon size (bp)   350
Average intron size (bp)   82
# of non-coding RNA   1,407
# of functionally annotated genes trembl   6,906
# of functionally annotated genes sprot   1,995
CEGMA complete (%)   92.74
CEGMA partial (%)   95.97

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