Summary of assembly and annotation
 
 Scientific name   JCM no.
 Trichosporon asahii   2466
Genome assembly:
ALLPATHS-LG (ver. 52155)
Genome assembly ver. 001
Estimated genome size   28,478,678
Sequence coverage   152
# of contigs   108
Total length (contigs)   24,613,517
N50 (contigs)   462,664
# of scaffolds   36
Total scaffold length (with gaps)   24,687,929
% gaps   0.3
N50 (scaffold)   2,256,092
GC%   59.5
Gene prediction:
  MAKER annotation pipeline (release 2.31.8)
    Gene predictors used: Augustus (3.0.3), SNAP (2013-02-16), GeneMark-ES (Suite 4.21)
    Reference used: Cryptococcus neoformans
    tRNAscan-SE (version 1.23)
  Infernal cmscan (version 1.1.1)
    Database used: Rfam (Release 12.0)
Functional annotaion:
  Sma3S: 2013-09-01
    Database used: Uniprot-TrEMBL (release 2015_11), Uniprot-sprot (release 2015_11)
Gene prediction & funcational annotation ver. 001
# of predicted gene models   8,763
# of predicted transcript models   8,763
Average transcript length (bp)   2,024
Average coding length (bp)   1,471
Average protein length (aa)   490
Average number of exons per gene model   3.5
Average exon size (bp)   418
Average intron size (bp)   84
# of non-coding RNA   578
# of functionally annotated genes trembl   8,252
# of functionally annotated genes sprot   1,882
CEGMA complete (%)   93.55
CEGMA partial (%)   95.56

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