|
|
|
Genome assembly: |
ALLPATHS-LG (ver. 52155) |
|
|
Genome assembly ver. 001 |
Estimated genome size |
|
28,478,678 |
Sequence coverage |
|
152 |
# of contigs |
|
108 |
Total length (contigs) |
|
24,613,517 |
N50 (contigs) |
|
462,664 |
# of scaffolds |
|
36 |
Total scaffold length (with gaps) |
|
24,687,929 |
% gaps |
|
0.3 |
N50 (scaffold) |
|
2,256,092 |
GC% |
|
59.5 |
|
|
Gene prediction: |
|
MAKER annotation pipeline (release 2.31.8) |
|
|
Gene predictors used: Augustus (3.0.3), SNAP (2013-02-16), GeneMark-ES (Suite 4.21) |
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|
Reference used: Cryptococcus neoformans |
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|
tRNAscan-SE (version 1.23) |
|
Infernal cmscan (version 1.1.1) |
|
|
Database used: Rfam (Release 12.0) |
Functional annotaion: |
|
Sma3S: 2013-09-01 |
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|
Database used: Uniprot-TrEMBL (release 2015_11), Uniprot-sprot (release 2015_11) |
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|
Gene prediction & funcational annotation ver. 001 |
# of predicted gene models |
|
8,763 |
# of predicted transcript models |
|
8,763 |
Average transcript length (bp) |
|
2,024 |
Average coding length (bp) |
|
1,471 |
Average protein length (aa) |
|
490 |
Average number of exons per gene model |
|
3.5 |
Average exon size (bp) |
|
418 |
Average intron size (bp) |
|
84 |
# of non-coding RNA |
|
578 |
# of functionally annotated genes trembl |
|
8,252 |
# of functionally annotated genes sprot |
|
1,882 |
CEGMA complete (%) |
|
93.55 |
CEGMA partial (%) |
|
95.56 |
|