Summary of assembly and annotation
 
 Scientific name   JCM no.
 Solicoccozyma terricola   24518
Genome assembly:
ALLPATHS-LG (ver. 52488)
Genome assembly ver. 001
Estimated genome size   26,335,193
Sequence coverage   112
# of contigs   799
Total length (contigs)   23,377,058
N50 (contigs)   60,723
# of scaffolds   79
Total scaffold length (with gaps)   24,117,869
% gaps   3.1
N50 (scaffold)   1,050,647
GC%   49.4
Gene prediction:
  MAKER annotation pipeline (release 2.31.8)
    Gene predictors used: Augustus (3.0.3), SNAP (2013-02-16), GeneMark-ES (Suite 4.21)
    Reference used: Cryptococcus neoformans
    tRNAscan-SE (version 1.23)
  Infernal cmscan (version 1.1.1)
    Database used: Rfam (Release 12.0)
Functional annotaion:
  Sma3S: 2013-09-01
    Database used: Uniprot-TrEMBL (release 2015_11), Uniprot-sprot (release 2015_11)
Gene prediction & funcational annotation ver. 001
# of predicted gene models   8,408
# of predicted transcript models   8,408
Average transcript length (bp)   2,079
Average coding length (bp)   1,546
Average protein length (aa)   515
Average number of exons per gene model   6.5
Average exon size (bp)   237
Average intron size (bp)   95
# of non-coding RNA   1,256
# of functionally annotated genes trembl   5,180
# of functionally annotated genes sprot   1,868
CEGMA complete (%)   89.52
CEGMA partial (%)   93.15

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