Summary of assembly and annotation
 
 Scientific name   JCM no.
 Rhodotorula toruloides   24501
Genome assembly:
ALLPATHS-LG (ver. 52155)
Genome assembly ver. 001
Estimated genome size   25,866,617
Sequence coverage   163
# of contigs   86
Total length (contigs)   20,286,360
N50 (contigs)   571,257
# of scaffolds   38
Total scaffold length (with gaps)   20,321,374
% gaps   0.2
N50 (scaffold)   1,204,811
GC%   61.6
Gene prediction:
  MAKER annotation pipeline (release 2.31.8)
    Gene predictors used: Augustus (3.0.3), SNAP (2013-02-16), GeneMark-ES (Suite 4.21)
    Reference used: Rhodosporidium toruloides
    tRNAscan-SE (version 1.23)
  Infernal cmscan (version 1.1.1)
    Database used: Rfam (Release 12.0)
Functional annotaion:
  Sma3S: 2013-09-01
    Database used: Uniprot-TrEMBL (release 2015_11), Uniprot-sprot (release 2015_11)
Gene prediction & funcational annotation ver. 001
# of predicted gene models   8,001
# of predicted transcript models   8,001
Average transcript length (bp)   2,066
Average coding length (bp)   1,629
Average protein length (aa)   543
Average number of exons per gene model   6.3
Average exon size (bp)   257
Average intron size (bp)   81
# of non-coding RNA   330
# of functionally annotated genes trembl   7,767
# of functionally annotated genes sprot   1,935
CEGMA complete (%)   94.35
CEGMA partial (%)   95.56

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