Summary of assembly and annotation
 
 Scientific name   JCM no.
 Naganishia albida   2334
Genome assembly:
ALLPATHS-LG (ver. 52155)
Genome assembly ver. 001
Estimated genome size   24,206,074
Sequence coverage   196
# of contigs   119
Total length (contigs)   20,605,809
N50 (contigs)   537,998
# of scaffolds   74
Total scaffold length (with gaps)   20,697,359
% gaps   0.4
N50 (scaffold)   975,819
GC%   53.8
Gene prediction:
  MAKER annotation pipeline (release 2.31.8)
    Gene predictors used: Augustus (3.0.3), SNAP (2013-02-16), GeneMark-ES (Suite 4.21)
    Reference used: Cryptococcus neoformans
    tRNAscan-SE (version 1.23)
  Infernal cmscan (version 1.1.1)
    Database used: Rfam (Release 12.0)
Functional annotaion:
  Sma3S: 2013-09-01
    Database used: Uniprot-TrEMBL (release 2015_11), Uniprot-sprot (release 2015_11)
Gene prediction & funcational annotation ver. 001
# of predicted gene models   7,443
# of predicted transcript models   7,443
Average transcript length (bp)   1,921
Average coding length (bp)   1,565
Average protein length (aa)   521
Average number of exons per gene model   6.1
Average exon size (bp)   255
Average intron size (bp)   68
# of non-coding RNA   388
# of functionally annotated genes trembl   4,486
# of functionally annotated genes sprot   1,792
CEGMA complete (%)   91.94
CEGMA partial (%)   93.95

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