Summary of assembly and annotation
 
 Scientific name   JCM no.
 Schizophyllum commune   22674
Genome assembly:
ALLPATHS-LG (ver. 52488)
Genome assembly ver. 001
Estimated genome size   49,103,034
Sequence coverage   128
# of contigs   494
Total length (contigs)   38,382,172
N50 (contigs)   370,532
# of scaffolds   230
Total scaffold length (with gaps)   39,005,850
% gaps   1.6
N50 (scaffold)   729,597
GC%   56.7
Gene prediction:
  MAKER annotation pipeline (release 2.31.8)
    Gene predictors used: Augustus (3.0.3), SNAP (2013-02-16), GeneMark-ES (Suite 4.21)
    Reference used: Schizophyllum commune
    tRNAscan-SE (version 1.23)
  Infernal cmscan (version 1.1.1)
    Database used: Rfam (Release 12.0)
Functional annotaion:
  Sma3S: 2013-09-01
    Database used: Uniprot-TrEMBL (release 2015_11), Uniprot-sprot (release 2015_11)
Gene prediction & funcational annotation ver. 001
# of predicted gene models   13,664
# of predicted transcript models   13,664
Average transcript length (bp)   1,957
Average coding length (bp)   1,500
Average protein length (aa)   500
Average number of exons per gene model   5.9
Average exon size (bp)   254
Average intron size (bp)   92
# of non-coding RNA   1,207
# of functionally annotated genes trembl   11,756
# of functionally annotated genes sprot   2,260
CEGMA complete (%)   95.56
CEGMA partial (%)   96.77

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