Summary of assembly and annotation
 
 Scientific name   JCM no.
 Memnoniella echinata   22618
Genome assembly:
ALLPATHS-LG (ver. 52488)
Genome assembly ver. 001
Estimated genome size   46,090,780
Sequence coverage   157
# of contigs   558
Total length (contigs)   42,482,652
N50 (contigs)   269,208
# of scaffolds   106
Total scaffold length (with gaps)   43,681,955
% gaps   2.7
N50 (scaffold)   3,459,663
GC%   49.8
Gene prediction:
  MAKER annotation pipeline (release 2.31.8)
    Gene predictors used: Augustus (3.0.3), SNAP (2013-02-16), GeneMark-ES (Suite 4.21)
    Reference used: Fusarium graminearum
    tRNAscan-SE (version 1.23)
  Infernal cmscan (version 1.1.1)
    Database used: Rfam (Release 12.0)
Functional annotaion:
  Sma3S: 2013-09-01
    Database used: Uniprot-TrEMBL (release 2015_11), Uniprot-sprot (release 2015_11)
Gene prediction & funcational annotation ver. 001
# of predicted gene models   14,185
# of predicted transcript models   14,185
Average transcript length (bp)   1,586
Average coding length (bp)   1,439
Average protein length (aa)   479
Average number of exons per gene model   2.7
Average exon size (bp)   530
Average intron size (bp)   82
# of non-coding RNA   628
# of functionally annotated genes trembl   12,009
# of functionally annotated genes sprot   3,087
CEGMA complete (%)   96.37
CEGMA partial (%)   97.98