Summary of assembly and annotation
 
 Scientific name   JCM no.
 Aspergillus awamori var. piceus   22320
Genome assembly:
ALLPATHS-LG (ver. 52488)
Genome assembly ver. 001
Estimated genome size   40,057,176
Sequence coverage   167
# of contigs   103
Total length (contigs)   36,046,852
N50 (contigs)   913,537
# of scaffolds   35
Total scaffold length (with gaps)   36,062,713
% gaps   0.0
N50 (scaffold)   4,068,578
GC%   48.8
Gene prediction:
  MAKER annotation pipeline (release 2.31.8)
    Gene predictors used: Augustus (3.0.3), SNAP (2013-02-16), GeneMark-ES (Suite 4.21)
    Reference used: Aspergillus oryzae
    tRNAscan-SE (version 1.23)
  Infernal cmscan (version 1.1.1)
    Database used: Rfam (Release 12.0)
Functional annotaion:
  Sma3S: 2013-09-01
    Database used: Uniprot-TrEMBL (release 2015_11), Uniprot-sprot (release 2015_11)
Gene prediction & funcational annotation ver. 001
# of predicted gene models   12,434
# of predicted transcript models   12,434
Average transcript length (bp)   1,570
Average coding length (bp)   1,402
Average protein length (aa)   467
Average number of exons per gene model   3.0
Average exon size (bp)   474
Average intron size (bp)   83
# of non-coding RNA   615
# of functionally annotated genes trembl   11,647
# of functionally annotated genes sprot   3,131
CEGMA complete (%)   96.37
CEGMA partial (%)   97.58

Copyright © 2022 Microbe Division (JCM) - All Rights Reserved