Summary of assembly and annotation
 
 Scientific name   JCM no.
 Ustilago maydis   2005
Genome assembly:
ALLPATHS-LG (ver. 52155)
Genome assembly ver. 001
Estimated genome size   32,224,738
Sequence coverage   90
# of contigs   104
Total length (contigs)   19,531,377
N50 (contigs)   446,761
# of scaffolds   56
Total scaffold length (with gaps)   19,606,871
% gaps   0.4
N50 (scaffold)   805,038
GC%   53.8
Gene prediction:
  MAKER annotation pipeline (release 2.31.8)
    Gene predictors used: Augustus (3.0.3), SNAP (2013-02-16), GeneMark-ES (Suite 4.21)
    Reference used: Ustilago maydis
    tRNAscan-SE (version 1.23)
  Infernal cmscan (version 1.1.1)
    Database used: Rfam (Release 12.0)
Functional annotaion:
  Sma3S: 2013-09-01
    Database used: Uniprot-TrEMBL (release 2015_11), Uniprot-sprot (release 2015_11)
Gene prediction & funcational annotation ver. 001
# of predicted gene models   7,036
# of predicted transcript models   7,036
Average transcript length (bp)   1,869
Average coding length (bp)   1,763
Average protein length (aa)   587
Average number of exons per gene model   1.6
Average exon size (bp)   1,096
Average intron size (bp)   169
# of non-coding RNA   455
# of functionally annotated genes trembl   6,461
# of functionally annotated genes sprot   1,913
CEGMA complete (%)   95.16
CEGMA partial (%)   95.56