Summary of assembly and annotation
 
 Scientific name   JCM no.
 Chalara thielavioides   1933
Genome assembly:
ALLPATHS-LG (ver. 52488)
Genome assembly ver. 001
Estimated genome size   47,382,231
Sequence coverage   159
# of contigs   256
Total length (contigs)   23,296,768
N50 (contigs)   161,617
# of scaffolds   12
Total scaffold length (with gaps)   23,333,049
% gaps   0.2
N50 (scaffold)   3,916,844
GC%   52.1
Gene prediction:
  MAKER annotation pipeline (release 2.31.8)
    Gene predictors used: Augustus (3.0.3), SNAP (2013-02-16), GeneMark-ES (Suite 4.21)
    Reference used: Chalara longipes
    tRNAscan-SE (version 1.23)
  Infernal cmscan (version 1.1.1)
    Database used: Rfam (Release 12.0)
Functional annotaion:
  Sma3S: 2013-09-01
    Database used: Uniprot-TrEMBL (release 2015_11), Uniprot-sprot (release 2015_11)
Gene prediction & funcational annotation ver. 001
# of predicted gene models   6,703
# of predicted transcript models   6,703
Average transcript length (bp)   1,806
Average coding length (bp)   1,599
Average protein length (aa)   533
Average number of exons per gene model   2.6
Average exon size (bp)   616
Average intron size (bp)   127
# of non-coding RNA   937
# of functionally annotated genes trembl   6,113
# of functionally annotated genes sprot   2,306
CEGMA complete (%)   94.35
CEGMA partial (%)   97.18