Summary of assembly and annotation
 
 Scientific name   JCM no.
 Exophiala alcalophila   1751
Genome assembly:
ALLPATHS-LG (ver. 52488)
Genome assembly ver. 001
Estimated genome size   30,640,210
Sequence coverage   169
# of contigs   85
Total length (contigs)   29,801,945
N50 (contigs)   621,975
# of scaffolds   12
Total scaffold length (with gaps)   29,853,552
% gaps   0.2
N50 (scaffold)   4,818,847
GC%   54.1
Gene prediction:
  MAKER annotation pipeline (release 2.31.8)
    Gene predictors used: Augustus (3.0.3), SNAP (2013-02-16), GeneMark-ES (Suite 4.21)
    Reference used: Aspergillus oryzae
    tRNAscan-SE (version 1.23)
  Infernal cmscan (version 1.1.1)
    Database used: Rfam (Release 12.0)
Functional annotaion:
  Sma3S: 2013-09-01
    Database used: Uniprot-TrEMBL (release 2015_11), Uniprot-sprot (release 2015_11)
Gene prediction & funcational annotation ver. 001
# of predicted gene models   11,617
# of predicted transcript models   11,617
Average transcript length (bp)   1,568
Average coding length (bp)   1,440
Average protein length (aa)   480
Average number of exons per gene model   2.4
Average exon size (bp)   606
Average intron size (bp)   89
# of non-coding RNA   197
# of functionally annotated genes trembl   10,288
# of functionally annotated genes sprot   2,774
CEGMA complete (%)   95.97
CEGMA partial (%)   97.98