Summary of assembly and annotation
 
 Scientific name   JCM no.
 Holtermannia corniformis   1743
Genome assembly:
ALLPATHS-LG (ver. 52155)
Genome assembly ver. 001
Estimated genome size   23,534,329
Sequence coverage   212
# of contigs   417
Total length (contigs)   19,751,224
N50 (contigs)   185,236
# of scaffolds   129
Total scaffold length (with gaps)   20,721,755
% gaps   4.7
N50 (scaffold)   584,093
GC%   55.2
Gene prediction:
  MAKER annotation pipeline (release 2.31.8)
    Gene predictors used: Augustus (3.0.3), SNAP (2013-02-16), GeneMark-ES (Suite 4.21)
    Reference used: Cryptococcus neoformans, Tremella mesenterica
    tRNAscan-SE (version 1.23)
  Infernal cmscan (version 1.1.1)
    Database used: Rfam (Release 12.0)
Functional annotaion:
  Sma3S: 2013-09-01
    Database used: Uniprot-TrEMBL (release 2015_11), Uniprot-sprot (release 2015_11)
Gene prediction & funcational annotation ver. 001
# of predicted gene models   8,289
# of predicted transcript models   8,289
Average transcript length (bp)   1,819
Average coding length (bp)   1,440
Average protein length (aa)   480
Average number of exons per gene model   6.6
Average exon size (bp)   217
Average intron size (bp)   66
# of non-coding RNA   455
# of functionally annotated genes trembl   5,073
# of functionally annotated genes sprot   1,842
CEGMA complete (%)   92.34
CEGMA partial (%)   94.76

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