Summary of assembly and annotation
 
 Scientific name   JCM no.
 Gliomastix tumulicola   17184
Genome assembly:
ALLPATHS-LG (ver. 52488)
Genome assembly ver. 001
Estimated genome size   44,866,703
Sequence coverage   234
# of contigs   196
Total length (contigs)   42,273,012
N50 (contigs)   908,364
# of scaffolds   72
Total scaffold length (with gaps)   42,385,401
% gaps   0.3
N50 (scaffold)   5,284,358
GC%   54.8
Gene prediction:
  MAKER annotation pipeline (release 2.31.8)
    Gene predictors used: Augustus (3.0.3), SNAP (2013-02-16), GeneMark-ES (Suite 4.21)
    Reference used: Acremonium alcalophilum
    tRNAscan-SE (version 1.23)
  Infernal cmscan (version 1.1.1)
    Database used: Rfam (Release 12.0)
Functional annotaion:
  Sma3S: 2013-09-01
    Database used: Uniprot-TrEMBL (release 2015_11), Uniprot-sprot (release 2015_11)
Gene prediction & funcational annotation ver. 001
# of predicted gene models   13,840
# of predicted transcript models   13,840
Average transcript length (bp)   1,670
Average coding length (bp)   1,490
Average protein length (aa)   496
Average number of exons per gene model   2.7
Average exon size (bp)   560
Average intron size (bp)   105
# of non-coding RNA   465
# of functionally annotated genes trembl   11,546
# of functionally annotated genes sprot   3,138
CEGMA complete (%)   96.37
CEGMA partial (%)   98.39