Summary of assembly and annotation
 
 Scientific name   JCM no.
 Priceomyces haplophilus   1635
Genome assembly:
ALLPATHS-LG (ver. 52155)
Genome assembly ver. 001
Estimated genome size   12,335,527
Sequence coverage   196
# of contigs   29
Total length (contigs)   10,489,440
N50 (contigs)   598,910
# of scaffolds   9
Total scaffold length (with gaps)   10,517,128
% gaps   0.3
N50 (scaffold)   1,142,060
GC%   41.0
Gene prediction:
  MAKER annotation pipeline (release 2.31.8)
    Gene predictors used: Augustus (3.0.3), SNAP (2013-02-16), GeneMark-ES (Suite 4.21)
    Reference used: Pichia stipitis
    tRNAscan-SE (version 1.23)
  Infernal cmscan (version 1.1.1)
    Database used: Rfam (Release 12.0)
Functional annotaion:
  Sma3S: 2013-09-01
    Database used: Uniprot-TrEMBL (release 2015_11), Uniprot-sprot (release 2015_11)
Gene prediction & funcational annotation ver. 001
# of predicted gene models   5,253
# of predicted transcript models   5,253
Average transcript length (bp)   1,566
Average coding length (bp)   1,507
Average protein length (aa)   502
Average number of exons per gene model   1.2
Average exon size (bp)   1,273
Average intron size (bp)   302
# of non-coding RNA   337
# of functionally annotated genes trembl   4,540
# of functionally annotated genes sprot   2,672
CEGMA complete (%)   95.16
CEGMA partial (%)   95.97

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