Summary of assembly and annotation
 
 Scientific name   JCM no.
 Apiotrichum brassicae   1599
Genome assembly:
ALLPATHS-LG (ver. 52155)
Genome assembly ver. 001
Estimated genome size   26,616,292
Sequence coverage   150
# of contigs   136
Total length (contigs)   23,585,677
N50 (contigs)   301,042
# of scaffolds   16
Total scaffold length (with gaps)   23,647,732
% gaps   0.3
N50 (scaffold)   2,410,059
GC%   56.5
Gene prediction:
  MAKER annotation pipeline (release 2.31.8)
    Gene predictors used: Augustus (3.0.3), SNAP (2013-02-16), GeneMark-ES (Suite 4.21)
    Reference used: Cryptococcus neoformans
    tRNAscan-SE (version 1.23)
  Infernal cmscan (version 1.1.1)
    Database used: Rfam (Release 12.0)
Functional annotaion:
  Sma3S: 2013-09-01
    Database used: Uniprot-TrEMBL (release 2015_11), Uniprot-sprot (release 2015_11)
Gene prediction & funcational annotation ver. 001
# of predicted gene models   7,942
# of predicted transcript models   7,942
Average transcript length (bp)   1,742
Average coding length (bp)   1,500
Average protein length (aa)   500
Average number of exons per gene model   4.4
Average exon size (bp)   340
Average intron size (bp)   70
# of non-coding RNA   484
# of functionally annotated genes trembl   6,134
# of functionally annotated genes sprot   1,890
CEGMA complete (%)   93.55
CEGMA partial (%)   93.55