Summary of assembly and annotation
 
 Scientific name   JCM no.
 Exophiala spinifera   15939
Genome assembly:
ALLPATHS-LG (ver. 52155)
Genome assembly ver. 001
Estimated genome size   35,640,650
Sequence coverage   119
# of contigs   108
Total length (contigs)   32,623,457
N50 (contigs)   1,126,370
# of scaffolds   38
Total scaffold length (with gaps)   32,702,796
% gaps   0.2
N50 (scaffold)   3,308,965
GC%   51.6
Gene prediction:
  MAKER annotation pipeline (release 2.31.8)
    Gene predictors used: Augustus (3.0.3), SNAP (2013-02-16), GeneMark-ES (Suite 4.21)
    Reference used: Aspergillus oryzae
    tRNAscan-SE (version 1.23)
  Infernal cmscan (version 1.1.1)
    Database used: Rfam (Release 12.0)
Functional annotaion:
  Sma3S: 2013-09-01
    Database used: Uniprot-TrEMBL (release 2015_11), Uniprot-sprot (release 2015_11)
Gene prediction & funcational annotation ver. 001
# of predicted gene models   12,947
# of predicted transcript models   12,947
Average transcript length (bp)   1,558
Average coding length (bp)   1,423
Average protein length (aa)   474
Average number of exons per gene model   2.4
Average exon size (bp)   597
Average intron size (bp)   94
# of non-coding RNA   289
# of functionally annotated genes trembl   12,183
# of functionally annotated genes sprot   2,879
CEGMA complete (%)   94.35
CEGMA partial (%)   98.39

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