Summary of assembly and annotation
 
 Scientific name   JCM no.
 Candida sorboxylosa   1536
Genome assembly:
ALLPATHS-LG (ver. 52155)
Genome assembly ver. 001
Estimated genome size   13,132,947
Sequence coverage   154
# of contigs   278
Total length (contigs)   10,328,397
N50 (contigs)   118,414
# of scaffolds   37
Total scaffold length (with gaps)   10,714,862
% gaps   3.6
N50 (scaffold)   1,238,071
GC%   38.2
Gene prediction:
  MAKER annotation pipeline (release 2.31.8)
    Gene predictors used: Augustus (3.0.3), SNAP (2013-02-16), GeneMark-ES (Suite 4.21)
    Reference used: Pichia pastoris
    tRNAscan-SE (version 1.23)
  Infernal cmscan (version 1.1.1)
    Database used: Rfam (Release 12.0)
Functional annotaion:
  Sma3S: 2013-09-01
    Database used: Uniprot-TrEMBL (release 2015_11), Uniprot-sprot (release 2015_11)
Gene prediction & funcational annotation ver. 001
# of predicted gene models   4,724
# of predicted transcript models   4,724
Average transcript length (bp)   1,747
Average coding length (bp)   1,547
Average protein length (aa)   515
Average number of exons per gene model   1.3
Average exon size (bp)   1,209
Average intron size (bp)   692
# of non-coding RNA   583
# of functionally annotated genes trembl   3,712
# of functionally annotated genes sprot   2,089
CEGMA complete (%)   91.53
CEGMA partial (%)   93.55