Summary of assembly and annotation
 
 Scientific name   JCM no.
 Hyphopichia homilentoma   1507
Genome assembly:
ALLPATHS-LG (ver. 52155)
Genome assembly ver. 001
Estimated genome size   13,398,015
Sequence coverage   155
# of contigs   32
Total length (contigs)   12,151,372
N50 (contigs)   708,264
# of scaffolds   8
Total scaffold length (with gaps)   12,176,763
% gaps   0.2
N50 (scaffold)   1,810,771
GC%   49.4
Gene prediction:
  MAKER annotation pipeline (release 2.31.8)
    Gene predictors used: Augustus (3.0.3), SNAP (2013-02-16), GeneMark-ES (Suite 4.21)
    Reference used: Hyphopichia burtonii
    tRNAscan-SE (version 1.23)
  Infernal cmscan (version 1.1.1)
    Database used: Rfam (Release 12.0)
Functional annotaion:
  Sma3S: 2013-09-01
    Database used: Uniprot-TrEMBL (release 2015_11), Uniprot-sprot (release 2015_11)
Gene prediction & funcational annotation ver. 001
# of predicted gene models   5,661
# of predicted transcript models   5,661
Average transcript length (bp)   1,574
Average coding length (bp)   1,515
Average protein length (aa)   505
Average number of exons per gene model   1.2
Average exon size (bp)   1,293
Average intron size (bp)   328
# of non-coding RNA   333
# of functionally annotated genes trembl   4,875
# of functionally annotated genes sprot   2,832
CEGMA complete (%)   95.16
CEGMA partial (%)   96.77