Summary of assembly and annotation
 
 Scientific name   JCM no.
 Ambrosiozyma kashinagicola   15019
Genome assembly:
ALLPATHS-LG (ver. 52488)
Genome assembly ver. 001
Estimated genome size   13,296,127
Sequence coverage   165
# of contigs   59
Total length (contigs)   12,270,685
N50 (contigs)   418,399
# of scaffolds   23
Total scaffold length (with gaps)   12,320,962
% gaps   0.4
N50 (scaffold)   1,369,417
GC%   36.1
Gene prediction:
  MAKER annotation pipeline (release 2.31.8)
    Gene predictors used: Augustus (3.0.3), SNAP (2013-02-16), GeneMark-ES (Suite 4.21)
    Reference used: Hansenula polymorpha
    tRNAscan-SE (version 1.23)
  Infernal cmscan (version 1.1.1)
    Database used: Rfam (Release 12.0)
Functional annotaion:
  Sma3S: 2013-09-01
    Database used: Uniprot-TrEMBL (release 2015_11), Uniprot-sprot (release 2015_11)
Gene prediction & funcational annotation ver. 001
# of predicted gene models   5,787
# of predicted transcript models   5,787
Average transcript length (bp)   1,625
Average coding length (bp)   1,525
Average protein length (aa)   508
Average number of exons per gene model   1.2
Average exon size (bp)   1,318
Average intron size (bp)   235
# of non-coding RNA   474
# of functionally annotated genes trembl   4,471
# of functionally annotated genes sprot   2,594
CEGMA complete (%)   95.16
CEGMA partial (%)   95.97

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