Summary of assembly and annotation
 
 Scientific name   JCM no.
 Yarrowia keelungensis   14894
Genome assembly:
ALLPATHS-LG (ver. 52488)
Genome assembly ver. 001
Estimated genome size   27,726,724
Sequence coverage   142
# of contigs   182
Total length (contigs)   21,684,736
N50 (contigs)   288,559
# of scaffolds   41
Total scaffold length (with gaps)   21,824,367
% gaps   0.6
N50 (scaffold)   2,565,013
GC%   48.0
Gene prediction:
  MAKER annotation pipeline (release 2.31.8)
    Gene predictors used: Augustus (3.0.3), SNAP (2013-02-16), GeneMark-ES (Suite 4.21)
    Reference used: Yarrowia lipolytica
    tRNAscan-SE (version 1.23)
  Infernal cmscan (version 1.1.1)
    Database used: Rfam (Release 12.0)
Functional annotaion:
  Sma3S: 2013-09-01
    Database used: Uniprot-TrEMBL (release 2015_11), Uniprot-sprot (release 2015_11)
Gene prediction & funcational annotation ver. 001
# of predicted gene models   6,618
# of predicted transcript models   6,618
Average transcript length (bp)   1,548
Average coding length (bp)   1,426
Average protein length (aa)   475
Average number of exons per gene model   1.3
Average exon size (bp)   1,118
Average intron size (bp)   430
# of non-coding RNA   935
# of functionally annotated genes trembl   6,020
# of functionally annotated genes sprot   2,746
CEGMA complete (%)   95.97
CEGMA partial (%)   95.97

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