Summary of assembly and annotation
 
 Scientific name   JCM no.
 Vanrija humicola   1457
Genome assembly:
ALLPATHS-LG (ver. 52155)
Genome assembly ver. 001
Estimated genome size   25,515,610
Sequence coverage   239
# of contigs   73
Total length (contigs)   22,618,212
N50 (contigs)   502,826
# of scaffolds   10
Total scaffold length (with gaps)   22,653,840
% gaps   0.2
N50 (scaffold)   3,082,120
GC%   62.7
Gene prediction:
  MAKER annotation pipeline (release 2.31.8)
    Gene predictors used: Augustus (3.0.3), SNAP (2013-02-16), GeneMark-ES (Suite 4.21)
    Reference used: Cryptococcus neoformans
    tRNAscan-SE (version 1.23)
  Infernal cmscan (version 1.1.1)
    Database used: Rfam (Release 12.0)
Functional annotaion:
  Sma3S: 2013-09-01
    Database used: Uniprot-TrEMBL (release 2015_11), Uniprot-sprot (release 2015_11)
Gene prediction & funcational annotation ver. 001
# of predicted gene models   9,021
# of predicted transcript models   9,021
Average transcript length (bp)   1,700
Average coding length (bp)   1,481
Average protein length (aa)   493
Average number of exons per gene model   4.4
Average exon size (bp)   337
Average intron size (bp)   63
# of non-coding RNA   372
# of functionally annotated genes trembl   6,600
# of functionally annotated genes sprot   1,969
CEGMA complete (%)   93.15
CEGMA partial (%)   95.16