Summary of assembly and annotation
 
 Scientific name   JCM no.
 Phaeotremella fagi   13614
Genome assembly:
ALLPATHS-LG (ver. 52155)
Genome assembly ver. 001
Estimated genome size   23,861,191
Sequence coverage   209
# of contigs   52
Total length (contigs)   22,627,876
N50 (contigs)   999,266
# of scaffolds   30
Total scaffold length (with gaps)   22,649,946
% gaps   0.1
N50 (scaffold)   1,602,030
GC%   42.4
Gene prediction:
  MAKER annotation pipeline (release 2.31.8)
    Gene predictors used: Augustus (3.0.3), SNAP (2013-02-16), GeneMark-ES (Suite 4.21)
    Reference used: Cryptococcus neoformans
    tRNAscan-SE (version 1.23)
  Infernal cmscan (version 1.1.1)
    Database used: Rfam (Release 12.0)
Functional annotaion:
  Sma3S: 2013-09-01
    Database used: Uniprot-TrEMBL (release 2015_11), Uniprot-sprot (release 2015_11)
Gene prediction & funcational annotation ver. 001
# of predicted gene models   10,515
# of predicted transcript models   10,515
Average transcript length (bp)   1,626
Average coding length (bp)   1,357
Average protein length (aa)   452
Average number of exons per gene model   5.7
Average exon size (bp)   236
Average intron size (bp)   55
# of non-coding RNA   303
# of functionally annotated genes trembl   6,295
# of functionally annotated genes sprot   1,991
CEGMA complete (%)   95.16
CEGMA partial (%)   95.56