Summary of assembly and annotation
 
 Scientific name   JCM no.
 Thermoascus crustaceus   12817
Genome assembly:
ALLPATHS-LG (ver. 52155)
Genome assembly ver. 001
Estimated genome size   33,323,222
Sequence coverage   155
# of contigs   258
Total length (contigs)   31,043,601
N50 (contigs)   290,402
# of scaffolds   33
Total scaffold length (with gaps)   31,644,316
% gaps   1.9
N50 (scaffold)   3,953,819
GC%   49.2
Gene prediction:
  MAKER annotation pipeline (release 2.31.8)
    Gene predictors used: Augustus (3.0.3), SNAP (2013-02-16), GeneMark-ES (Suite 4.21)
    Reference used: Thermoascus aurantiacus
    tRNAscan-SE (version 1.23)
  Infernal cmscan (version 1.1.1)
    Database used: Rfam (Release 12.0)
Functional annotaion:
  Sma3S: 2013-09-01
    Database used: Uniprot-TrEMBL (release 2015_11), Uniprot-sprot (release 2015_11)
Gene prediction & funcational annotation ver. 001
# of predicted gene models   10,554
# of predicted transcript models   10,554
Average transcript length (bp)   1,518
Average coding length (bp)   1,330
Average protein length (aa)   443
Average number of exons per gene model   3.0
Average exon size (bp)   446
Average intron size (bp)   93
# of non-coding RNA   521
# of functionally annotated genes trembl   8,318
# of functionally annotated genes sprot   2,782
CEGMA complete (%)   95.16
CEGMA partial (%)   98.39

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