Summary of assembly and annotation
 
 Scientific name   JCM no.
 Malassezia nana   12085
Genome assembly:
ALLPATHS-LG (ver. 52488)
Genome assembly ver. 001
Estimated genome size   8,263,824
Sequence coverage   361
# of contigs   29
Total length (contigs)   7,566,983
N50 (contigs)   624,426
# of scaffolds   13
Total scaffold length (with gaps)   7,579,486
% gaps   0.2
N50 (scaffold)   1,323,904
GC%   58.0
Gene prediction:
  MAKER annotation pipeline (release 2.31.8)
    Gene predictors used: Augustus (3.0.3), SNAP (2013-02-16), GeneMark-ES (Suite 4.21)
    Reference used: Malassezia globosa
    tRNAscan-SE (version 1.23)
  Infernal cmscan (version 1.1.1)
    Database used: Rfam (Release 12.0)
Functional annotaion:
  Sma3S: 2013-09-01
    Database used: Uniprot-TrEMBL (release 2015_11), Uniprot-sprot (release 2015_11)
Gene prediction & funcational annotation ver. 001
# of predicted gene models   4,222
# of predicted transcript models   4,222
Average transcript length (bp)   1,570
Average coding length (bp)   1,512
Average protein length (aa)   504
Average number of exons per gene model   2.1
Average exon size (bp)   735
Average intron size (bp)   51
# of non-coding RNA   147
# of functionally annotated genes trembl   3,844
# of functionally annotated genes sprot   1,524
CEGMA complete (%)   88.71
CEGMA partial (%)   93.55