Summary of assembly and annotation
 
 Scientific name   JCM no.
 Malassezia japonica   11963
Genome assembly:
ALLPATHS-LG (ver. 52488)
Genome assembly ver. 001
Estimated genome size   8,807,236
Sequence coverage   359
# of contigs   28
Total length (contigs)   8,358,166
N50 (contigs)   474,362
# of scaffolds   16
Total scaffold length (with gaps)   8,364,631
% gaps   0.1
N50 (scaffold)   814,852
GC%   62.3
Gene prediction:
  MAKER annotation pipeline (release 2.31.8)
    Gene predictors used: Augustus (3.0.3), SNAP (2013-02-16), GeneMark-ES (Suite 4.21)
    Reference used: Malassezia globosa
    tRNAscan-SE (version 1.23)
  Infernal cmscan (version 1.1.1)
    Database used: Rfam (Release 12.0)
Functional annotaion:
  Sma3S: 2013-09-01
    Database used: Uniprot-TrEMBL (release 2015_11), Uniprot-sprot (release 2015_11)
Gene prediction & funcational annotation ver. 001
# of predicted gene models   4,563
# of predicted transcript models   4,563
Average transcript length (bp)   1,668
Average coding length (bp)   1,577
Average protein length (aa)   525
Average number of exons per gene model   2.5
Average exon size (bp)   642
Average intron size (bp)   60
# of non-coding RNA   169
# of functionally annotated genes trembl   3,879
# of functionally annotated genes sprot   1,583
CEGMA complete (%)   87.50
CEGMA partial (%)   93.15