Summary of assembly and annotation
 
 Scientific name   JCM no.
 Cryptococcus phenolicus   11743
Genome assembly:
ALLPATHS-LG (ver. 52155)
Genome assembly ver. 001
Estimated genome size   26,403,490
Sequence coverage   193
# of contigs   322
Total length (contigs)   21,929,331
N50 (contigs)   180,861
# of scaffolds   71
Total scaffold length (with gaps)   22,263,516
% gaps   1.5
N50 (scaffold)   969,091
GC%   54.9
Gene prediction:
  MAKER annotation pipeline (release 2.31.8)
    Gene predictors used: Augustus (3.0.3), SNAP (2013-02-16), GeneMark-ES (Suite 4.21)
    Reference used: Cryptococcus neoformans
    tRNAscan-SE (version 1.23)
  Infernal cmscan (version 1.1.1)
    Database used: Rfam (Release 12.0)
Functional annotaion:
  Sma3S: 2013-09-01
    Database used: Uniprot-TrEMBL (release 2015_11), Uniprot-sprot (release 2015_11)
Gene prediction & funcational annotation ver. 001
# of predicted gene models   7,536
# of predicted transcript models   7,536
Average transcript length (bp)   2,107
Average coding length (bp)   1,592
Average protein length (aa)   530
Average number of exons per gene model   6.8
Average exon size (bp)   233
Average intron size (bp)   87
# of non-coding RNA   540
# of functionally annotated genes trembl   4,823
# of functionally annotated genes sprot   1,807
CEGMA complete (%)   92.74
CEGMA partial (%)   94.35

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