Summary of assembly and annotation
 
 Scientific name   JCM no.
 Filobasidium wieringae   11695
Genome assembly:
ALLPATHS-LG (ver. 52155)
Genome assembly ver. 001
Estimated genome size   24,248,271
Sequence coverage   186
# of contigs   83
Total length (contigs)   19,694,769
N50 (contigs)   621,482
# of scaffolds   36
Total scaffold length (with gaps)   19,781,320
% gaps   0.4
N50 (scaffold)   951,588
GC%   49.9
Gene prediction:
  MAKER annotation pipeline (release 2.31.8)
    Gene predictors used: Augustus (3.0.3), SNAP (2013-02-16), GeneMark-ES (Suite 4.21)
    Reference used: Cryptococcus neoformans
    tRNAscan-SE (version 1.23)
  Infernal cmscan (version 1.1.1)
    Database used: Rfam (Release 12.0)
Functional annotaion:
  Sma3S: 2013-09-01
    Database used: Uniprot-TrEMBL (release 2015_11), Uniprot-sprot (release 2015_11)
Gene prediction & funcational annotation ver. 001
# of predicted gene models   7,239
# of predicted transcript models   7,239
Average transcript length (bp)   1,983
Average coding length (bp)   1,592
Average protein length (aa)   530
Average number of exons per gene model   6.2
Average exon size (bp)   255
Average intron size (bp)   73
# of non-coding RNA   376
# of functionally annotated genes trembl   4,390
# of functionally annotated genes sprot   1,747
CEGMA complete (%)   92.74
CEGMA partial (%)   95.56