Summary of assembly and annotation
 
 Scientific name   JCM no.
 Fusarium commune   11502
Genome assembly:
ALLPATHS-LG (ver. 52488)
Genome assembly ver. 001
Estimated genome size   50,415,908
Sequence coverage   304
# of contigs   129
Total length (contigs)   46,064,279
N50 (contigs)   930,269
# of scaffolds   19
Total scaffold length (with gaps)   46,178,503
% gaps   0.2
N50 (scaffold)   4,590,821
GC%   47.5
Gene prediction:
  MAKER annotation pipeline (release 2.31.8)
    Gene predictors used: Augustus (3.0.3), SNAP (2013-02-16), GeneMark-ES (Suite 4.21)
    Reference used: Fusarium oxysporum
    tRNAscan-SE (version 1.23)
  Infernal cmscan (version 1.1.1)
    Database used: Rfam (Release 12.0)
Functional annotaion:
  Sma3S: 2013-09-01
    Database used: Uniprot-TrEMBL (release 2015_11), Uniprot-sprot (release 2015_11)
Gene prediction & funcational annotation ver. 001
# of predicted gene models   16,764
# of predicted transcript models   16,764
Average transcript length (bp)   1,457
Average coding length (bp)   1,317
Average protein length (aa)   439
Average number of exons per gene model   2.7
Average exon size (bp)   495
Average intron size (bp)   82
# of non-coding RNA   512
# of functionally annotated genes trembl   16,073
# of functionally annotated genes sprot   3,240
CEGMA complete (%)   96.37
CEGMA partial (%)   97.58