Summary of assembly and annotation
 
 Scientific name   JCM no.
 Malassezia dermatis   11348
Genome assembly:
ALLPATHS-LG (ver. 52488)
Genome assembly ver. 001
Estimated genome size   8,217,958
Sequence coverage   355
# of contigs   55
Total length (contigs)   7,534,117
N50 (contigs)   276,268
# of scaffolds   18
Total scaffold length (with gaps)   7,551,239
% gaps   0.2
N50 (scaffold)   1,325,307
GC%   59.0
Gene prediction:
  MAKER annotation pipeline (release 2.31.8)
    Gene predictors used: Augustus (3.0.3), SNAP (2013-02-16), GeneMark-ES (Suite 4.21)
    Reference used: Malassezia globosa
    tRNAscan-SE (version 1.23)
  Infernal cmscan (version 1.1.1)
    Database used: Rfam (Release 12.0)
Functional annotaion:
  Sma3S: 2013-09-01
    Database used: Uniprot-TrEMBL (release 2015_11), Uniprot-sprot (release 2015_11)
Gene prediction & funcational annotation ver. 001
# of predicted gene models   4,186
# of predicted transcript models   4,186
Average transcript length (bp)   1,583
Average coding length (bp)   1,512
Average protein length (aa)   504
Average number of exons per gene model   2.2
Average exon size (bp)   686
Average intron size (bp)   56
# of non-coding RNA   181
# of functionally annotated genes trembl   3,742
# of functionally annotated genes sprot   1,508
CEGMA complete (%)   84.27
CEGMA partial (%)   91.13