Summary of assembly and annotation
 
 Scientific name   JCM no.
 Trichosporon dermatis   11170
Genome assembly:
ALLPATHS-LG (ver. 52488)
Genome assembly ver. 001
Estimated genome size   26,793,560
Sequence coverage   166
# of contigs   110
Total length (contigs)   23,318,395
N50 (contigs)   465,793
# of scaffolds   37
Total scaffold length (with gaps)   23,337,637
% gaps   0.1
N50 (scaffold)   2,690,106
GC%   60.1
Gene prediction:
  MAKER annotation pipeline (release 2.31.8)
    Gene predictors used: Augustus (3.0.3), SNAP (2013-02-16), GeneMark-ES (Suite 4.21)
    Reference used: Cryptococcus neoformans
    tRNAscan-SE (version 1.23)
  Infernal cmscan (version 1.1.1)
    Database used: Rfam (Release 12.0)
Functional annotaion:
  Sma3S: 2013-09-01
    Database used: Uniprot-TrEMBL (release 2015_11), Uniprot-sprot (release 2015_11)
Gene prediction & funcational annotation ver. 001
# of predicted gene models   8,671
# of predicted transcript models   8,671
Average transcript length (bp)   1,802
Average coding length (bp)   1,513
Average protein length (aa)   504
Average number of exons per gene model   4.3
Average exon size (bp)   348
Average intron size (bp)   85
# of non-coding RNA   448
# of functionally annotated genes trembl   7,125
# of functionally annotated genes sprot   1,964
CEGMA complete (%)   92.74
CEGMA partial (%)   94.76