Summary of assembly and annotation
 
 Scientific name   JCM no.
 Leucosporidiella creatinivora   10699
Genome assembly:
ALLPATHS-LG (ver. 52488)
Genome assembly ver. 001
Estimated genome size   29,919,188
Sequence coverage   143
# of contigs   297
Total length (contigs)   27,560,278
N50 (contigs)   231,415
# of scaffolds   122
Total scaffold length (with gaps)   27,969,159
% gaps   1.5
N50 (scaffold)   836,129
GC%   58.7
Gene prediction:
  MAKER annotation pipeline (release 2.31.8)
    Gene predictors used: Augustus (3.0.3), SNAP (2013-02-16), GeneMark-ES (Suite 4.21)
    Reference used: Rhodosporidium toruloides
    tRNAscan-SE (version 1.23)
  Infernal cmscan (version 1.1.1)
    Database used: Rfam (Release 12.0)
Functional annotaion:
  Sma3S: 2013-09-01
    Database used: Uniprot-TrEMBL (release 2015_11), Uniprot-sprot (release 2015_11)
Gene prediction & funcational annotation ver. 001
# of predicted gene models   10,454
# of predicted transcript models   10,454
Average transcript length (bp)   2,034
Average coding length (bp)   1,495
Average protein length (aa)   498
Average number of exons per gene model   6.7
Average exon size (bp)   222
Average intron size (bp)   93
# of non-coding RNA   995
# of functionally annotated genes trembl   6,855
# of functionally annotated genes sprot   2,128
CEGMA complete (%)   93.95
CEGMA partial (%)   95.97

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