Summary of assembly and annotation
 
 Scientific name   JCM no.
 Apiotrichum veenhuisii   10691
Genome assembly:
ALLPATHS-LG (ver. 52488)
Genome assembly ver. 001
Estimated genome size   35,463,486
Sequence coverage   131
# of contigs   179
Total length (contigs)   31,536,011
N50 (contigs)   346,892
# of scaffolds   35
Total scaffold length (with gaps)   31,617,680
% gaps   0.3
N50 (scaffold)   2,551,142
GC%   59.6
Gene prediction:
  MAKER annotation pipeline (release 2.31.8)
    Gene predictors used: Augustus (3.0.3), SNAP (2013-02-16), GeneMark-ES (Suite 4.21)
    Reference used: Cryptococcus neoformans
    tRNAscan-SE (version 1.23)
  Infernal cmscan (version 1.1.1)
    Database used: Rfam (Release 12.0)
Functional annotaion:
  Sma3S: 2013-09-01
    Database used: Uniprot-TrEMBL (release 2015_11), Uniprot-sprot (release 2015_11)
Gene prediction & funcational annotation ver. 001
# of predicted gene models   9,184
# of predicted transcript models   9,184
Average transcript length (bp)   1,861
Average coding length (bp)   1,518
Average protein length (aa)   506
Average number of exons per gene model   4.3
Average exon size (bp)   350
Average intron size (bp)   101
# of non-coding RNA   979
# of functionally annotated genes trembl   6,539
# of functionally annotated genes sprot   1,969
CEGMA complete (%)   93.95
CEGMA partial (%)   95.56

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