Summary of assembly and annotation
 
 Scientific name   JCM no.
 Cutaneotrichosporon guehoae   10690
Genome assembly:
ALLPATHS-LG (ver. 52488)
Genome assembly ver. 001
Estimated genome size   39,677,341
Sequence coverage   128
# of contigs   871
Total length (contigs)   33,459,844
N50 (contigs)   69,742
# of scaffolds   35
Total scaffold length (with gaps)   33,698,914
% gaps   0.7
N50 (scaffold)   2,162,681
GC%   59.2
Gene prediction:
  MAKER annotation pipeline (release 2.31.8)
    Gene predictors used: Augustus (3.0.3), SNAP (2013-02-16), GeneMark-ES (Suite 4.21)
    Reference used: Cryptococcus neoformans
    tRNAscan-SE (version 1.23)
  Infernal cmscan (version 1.1.1)
    Database used: Rfam (Release 12.0)
Functional annotaion:
  Sma3S: 2013-09-01
    Database used: Uniprot-TrEMBL (release 2015_11), Uniprot-sprot (release 2015_11)
Gene prediction & funcational annotation ver. 001
# of predicted gene models   10,204
# of predicted transcript models   10,204
Average transcript length (bp)   1,917
Average coding length (bp)   1,464
Average protein length (aa)   488
Average number of exons per gene model   4.6
Average exon size (bp)   319
Average intron size (bp)   125
# of non-coding RNA   1,154
# of functionally annotated genes trembl   6,907
# of functionally annotated genes sprot   1,981
CEGMA complete (%)   91.13
CEGMA partial (%)   94.35

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