Summary of assembly and annotation
 
 Scientific name   JCM no.
 Aspergillus fumigatus   10253
Genome assembly:
ALLPATHS-LG (ver. 52155)
Genome assembly ver. 001
Estimated genome size   31,292,248
Sequence coverage   200
# of contigs   113
Total length (contigs)   28,263,165
N50 (contigs)   624,428
# of scaffolds   26
Total scaffold length (with gaps)   28,388,732
% gaps   0.4
N50 (scaffold)   2,594,130
GC%   49.4
Gene prediction:
  MAKER annotation pipeline (release 2.31.8)
    Gene predictors used: Augustus (3.0.3), SNAP (2013-02-16), GeneMark-ES (Suite 4.21)
    Reference used: Aspergillus fumigatus
    tRNAscan-SE (version 1.23)
  Infernal cmscan (version 1.1.1)
    Database used: Rfam (Release 12.0)
Functional annotaion:
  Sma3S: 2013-09-01
    Database used: Uniprot-TrEMBL (release 2015_11), Uniprot-sprot (release 2015_11)
Gene prediction & funcational annotation ver. 001
# of predicted gene models   10,343
# of predicted transcript models   10,343
Average transcript length (bp)   1,573
Average coding length (bp)   1,414
Average protein length (aa)   471
Average number of exons per gene model   2.9
Average exon size (bp)   482
Average intron size (bp)   80
# of non-coding RNA   427
# of functionally annotated genes trembl   9,789
# of functionally annotated genes sprot   3,005
CEGMA complete (%)   97.18
CEGMA partial (%)   98.79

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