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|
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Genome assembly: |
ALLPATHS-LG (ver. 52155) |
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|
Genome assembly ver. 001 |
Estimated genome size |
|
31,292,248 |
Sequence coverage |
|
200 |
# of contigs |
|
113 |
Total length (contigs) |
|
28,263,165 |
N50 (contigs) |
|
624,428 |
# of scaffolds |
|
26 |
Total scaffold length (with gaps) |
|
28,388,732 |
% gaps |
|
0.4 |
N50 (scaffold) |
|
2,594,130 |
GC% |
|
49.4 |
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|
Gene prediction: |
|
MAKER annotation pipeline (release 2.31.8) |
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|
Gene predictors used: Augustus (3.0.3), SNAP (2013-02-16), GeneMark-ES (Suite 4.21) |
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Reference used: Aspergillus fumigatus |
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|
tRNAscan-SE (version 1.23) |
|
Infernal cmscan (version 1.1.1) |
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Database used: Rfam (Release 12.0) |
Functional annotaion: |
|
Sma3S: 2013-09-01 |
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|
Database used: Uniprot-TrEMBL (release 2015_11), Uniprot-sprot (release 2015_11) |
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Gene prediction & funcational annotation ver. 001 |
# of predicted gene models |
|
10,343 |
# of predicted transcript models |
|
10,343 |
Average transcript length (bp) |
|
1,573 |
Average coding length (bp) |
|
1,414 |
Average protein length (aa) |
|
471 |
Average number of exons per gene model |
|
2.9 |
Average exon size (bp) |
|
482 |
Average intron size (bp) |
|
80 |
# of non-coding RNA |
|
427 |
# of functionally annotated genes trembl |
|
9,789 |
# of functionally annotated genes sprot |
|
3,005 |
CEGMA complete (%) |
|
97.18 |
CEGMA partial (%) |
|
98.79 |
|