Summary of assembly and annotation
 
 Scientific name   JCM no.
 Rhodotorula toruloides   10049
Genome assembly:
ALLPATHS-LG (ver. 52155)
Genome assembly ver. 001
Estimated genome size   26,429,719
Sequence coverage   164
# of contigs   81
Total length (contigs)   20,225,313
N50 (contigs)   614,433
# of scaffolds   53
Total scaffold length (with gaps)   20,270,281
% gaps   0.2
N50 (scaffold)   930,903
GC%   61.9
Gene prediction:
  MAKER annotation pipeline (release 2.31.8)
    Gene predictors used: Augustus (3.0.3), SNAP (2013-02-16), GeneMark-ES (Suite 4.21)
    Reference used: Rhodosporidium toruloides
    tRNAscan-SE (version 1.23)
  Infernal cmscan (version 1.1.1)
    Database used: Rfam (Release 12.0)
Functional annotaion:
  Sma3S: 2013-09-01
    Database used: Uniprot-TrEMBL (release 2015_11), Uniprot-sprot (release 2015_11)
Gene prediction & funcational annotation ver. 001
# of predicted gene models   7,938
# of predicted transcript models   7,938
Average transcript length (bp)   2,084
Average coding length (bp)   1,650
Average protein length (aa)   550
Average number of exons per gene model   6.4
Average exon size (bp)   257
Average intron size (bp)   79
# of non-coding RNA   433
# of functionally annotated genes trembl   7,801
# of functionally annotated genes sprot   1,934
CEGMA complete (%)   93.95
CEGMA partial (%)   94.76

Copyright © 2022 Microbe Division (JCM) - All Rights Reserved