Summary of assembly and annotation
 
 Scientific name   JCM no.
 Rhodosporidium toruloides   10021
Genome assembly:
ALLPATHS-LG (ver. 52155)
Genome assembly ver. 001
Estimated genome size   23,639,829
Sequence coverage   204
# of contigs   107
Total length (contigs)   20,348,856
N50 (contigs)   548,636
# of scaffolds   78
Total scaffold length (with gaps)   20,389,818
% gaps   0.2
N50 (scaffold)   938,736
GC%   61.8
Gene prediction:
  MAKER annotation pipeline (release 2.31.8)
    Gene predictors used: Augustus (3.0.3), SNAP (2013-02-16), GeneMark-ES (Suite 4.21)
    Reference used: Rhodosporidium toruloides
    tRNAscan-SE (version 1.23)
  Infernal cmscan (version 1.1.1)
    Database used: Rfam (Release 12.0)
Functional annotaion:
  Sma3S: 2013-09-01
    Database used: Uniprot-TrEMBL (release 2015_11), Uniprot-sprot (release 2015_11)
Gene prediction & funcational annotation ver. 001
# of predicted gene models   8,007
# of predicted transcript models   8,007
Average transcript length (bp)   2,075
Average coding length (bp)   1,636
Average protein length (aa)   545
Average number of exons per gene model   6.3
Average exon size (bp)   257
Average intron size (bp)   81
# of non-coding RNA   568
# of functionally annotated genes trembl   7,879
# of functionally annotated genes sprot   1,942
CEGMA complete (%)   94.35
CEGMA partial (%)   95.97

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