Summary of assembly and annotation
 
 Scientific name   JCM no.
 Apiotrichum gracile   10018
Genome assembly:
ALLPATHS-LG (ver. 52155)
Genome assembly ver. 001
Estimated genome size   27,395,618
Sequence coverage   174
# of contigs   62
Total length (contigs)   24,096,927
N50 (contigs)   720,667
# of scaffolds   17
Total scaffold length (with gaps)   24,114,851
% gaps   0.1
N50 (scaffold)   4,554,691
GC%   59.2
Gene prediction:
  MAKER annotation pipeline (release 2.31.8)
    Gene predictors used: Augustus (3.0.3), SNAP (2013-02-16), GeneMark-ES (Suite 4.21)
    Reference used: Cryptococcus neoformans
    tRNAscan-SE (version 1.23)
  Infernal cmscan (version 1.1.1)
    Database used: Rfam (Release 12.0)
Functional annotaion:
  Sma3S: 2013-09-01
    Database used: Uniprot-TrEMBL (release 2015_11), Uniprot-sprot (release 2015_11)
Gene prediction & funcational annotation ver. 001
# of predicted gene models   8,554
# of predicted transcript models   8,554
Average transcript length (bp)   1,708
Average coding length (bp)   1,474
Average protein length (aa)   491
Average number of exons per gene model   4.3
Average exon size (bp)   346
Average intron size (bp)   71
# of non-coding RNA   745
# of functionally annotated genes trembl   6,244
# of functionally annotated genes sprot   1,899
CEGMA complete (%)   92.34
CEGMA partial (%)   94.35

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