JCM Catalogue

"Geomonas oryzae"

Taxonomy in NCBI database: Bacteria; Pseudomonadati; Thermodesulfobacteriota; Desulfuromonadia; Geobacterales; Geobacteraceae.

33030^T <-- Y. Masuda and Z. Xu; Grad. Sch. of Agric. & Life Sci., Univ. of Tokyo, Japan; S43.
Accessioned in 2018.
=MCCC 1K03691.
Proposed type strain [13037].
Medium: 1235; Temperature: 30°C; Anaerobic; Rehydration fluid: 839.

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Source: Paddy field soil from Nagaoka, Niigata, Japan [13037].
Biochemistry/Physiology: [13037].
Fatty acid: [13037].
Quinone: MK-8 [13037].
G+C (mol%): 61.2 (genome sequence) [13037].
Phylogeny: 16S rRNA gene (MH915553) [13037]; 92 core genes and amino acids of five house-keeping genes [13037].
Other taxonomic data: Average nucleotide identity, genome-to-genome distances [13037].
Genome sequence: RAHW00000000 [13037].
NCBI Assembly ID: GCA_004117875 (GenBank), GCF_004117875 (RefSeq).
BacDive ID: 164441.
NCBI Taxonomy ID: 2364273.

Related information on delivery / use of the strain

Biosafety level		1
Terms and conditions		Not applicable
Export control ⁽¹⁾		No
Distribution control in Japan ⁽²⁾		No
Genetically modified microorganism		No
Technical information		-
Additional information		-

(1) in complying with the Foreign Exchange and Foreign Trade Control Law of Japan
(2) in complying with the Plant Protection Law of Japan

Delivery category

Domestic	A (Freeze-dried or L-dried culture) or C (Actively growing culture on request)
Overseas	A (Freeze-dried or L-dried culture) or C (Actively growing culture on request)

Viability and purity assays of this product were performed at the time of production as part of quality control. The authenticity of the culture was confirmed by analyzing an appropriate gene sequence, e.g., the 16S rRNA gene for prokaryotes, the D1/D2 region of LSU rRNA gene, the ITS region of the nuclear rRNA operon, etc. for eukaryotes. The characteristics and/or functions of the strain appearing in the catalogue are based on information from the corresponding literature and JCM does not guarantee them.

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